8J8Y

Phytoplasma immunodominant membrane protein

PDB DOI: https://doi.org/10.2210/pdb8J8Y/pdb

Classification: PROTEIN BINDING
Organism(s): Peanut witches'-broom phytoplasma
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-05-02 Released: 2024-05-08
Deposition Author(s): Wang, H.C., Ko, T.P.
Funding Organization(s): Ministry of Science and Technology (MoST, Taiwan)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.222
R-Value Work: 0.180
R-Value Observed: 0.182

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Phytoplasma immunodominant membrane protein

Wang, H.C., Ko, T.P.

To be published.

Macromolecule Content

Total Structure Weight: 31.57 kDa
Atom Count: 2,404
Modelled Residue Count: 255
Deposited Residue Count: 282
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Immunodominant membrane protein	A, B	141	Peanut witches'-broom phytoplasma	Mutation(s): 0 Gene Names: imp
UniProt
Find proteins for E5D8B7 (Peanut witches'-broom phytoplasma) Explore E5D8B7 Go to UniProtKB: E5D8B7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	E5D8B7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.222
R-Value Work: 0.180
R-Value Observed: 0.182
Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 96.533	α = 90
b = 96.533	β = 90
c = 54.188	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data collection
HKL-2000	data scaling
MOLREP	phasing
HKL-2000	data reduction

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-05-08

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, Taiwan)	Taiwan	MOST111-2628-B038-010

Revision History (Full details and data files)

Version 1.0: 2024-05-08
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.